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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28268102_28283214_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28268102 - 28283214
Intron Length:
15113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATAATTAATT
Flanking Amino Acid:
CIGTKLWLAKRPNPCLVTRA
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.8
76.7
37.2
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
58.7
0.35
1.8
75.18
41.4

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244