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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28310940_28325143_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28310940 - 28325143
Intron Length:
14204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
ATGACCAAAACT
Flanking Amino Acid:
SMAPFVPFIIRCGHSPVYRS
Intron Amino Acid Position:
1346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
49.9
0.08
2
72.28
44.2

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244