About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28345467_28346152_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28345467 - 28346152
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTAAAACC
Flanking Amino Acid:
ILGFMSPVWAVRNSSTLLFS
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82
0.72
0.8
83.4
26.7
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
51.2
0.02
1.9
68.86
36.8

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244