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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28350404_28357955_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28350404 - 28357955
Intron Length:
7552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTGTTTCACG
Flanking Amino Acid:
GFVQLTEMLSRCNSRSLRKM
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
0.9
74.7
35.3
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
50.3
-0.1
2.2
65.07
43.3

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244