Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28367959_28368981_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28367959 - 28368981

Intron Length:

1023

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTTATTTGAACA

Flanking Amino Acid:

SVAEIFSVPKGQVHVFKLDQ

Intron Amino Acid Position:

765

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

74.6

28.6

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

76.1

0.59

73.4

40.7

Minor 5ss

25.3

-2.8

3.2

31.7

42.9

Minor BPS

65.8

0.49

1.4

76.56

34.1

Associated Gene:

Gene:

THADA

Ensembl Gene ID:

ENSAPLG00000010472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010987

28221349 - 28380592

159244