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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28374314_28374610_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28374314 - 28374610
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTTGCTATTACA
Flanking Amino Acid:
YEPAEELPSLVSDLLLGLKK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
83.4
0.75
0.8
77.2
35.8
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
51.7
0.05
2
72.06
39.9

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244