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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28374706_28375247_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28374706 - 28375247
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
TCTGAGTAAAAT
Flanking Amino Acid:
LKSSISFLMDETLLQTVQTT
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
68.1
0.41
0.9
62.4
33.6
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
40.6
-0.6
2.5
61.49
48

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244