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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28377619_28379180_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28377619 - 28379180
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTACCGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACCG
Flanking Amino Acid:
VKNPLKKVLASSLNGLPEQL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
81.1
32.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
71.9
0.49
0.9
65.7
35.8
Minor 5ss
33.3
-1.9
3.3
47.8
47.9
Minor BPS
66.7
0.38
1.7
71.56
41.5

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244