Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28379312_28379740_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28379312 - 28379740

Intron Length:

429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTGTTGATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTTTATTGATCA

Flanking Amino Acid:

GIQQIQCIKQIMPLVKMMDQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

84.4

26.9

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

76.1

0.59

40.7

Minor 5ss

45.6

-0.5

3.1

65.7

39.5

Minor BPS

0.12

1.9

73.27

38.4

Associated Gene:

Gene:

THADA

Ensembl Gene ID:

ENSAPLG00000010472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010987

28221349 - 28380592

159244