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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28390529_28405280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28390529 - 28405280
Intron Length:
14752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
SKIRELLAEKMQQLERQVID
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
77.7
35.4
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667