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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28405344_28405915_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28405344 - 28405915
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCTA
5'SS Class:
major
3'SS Sequence:
ACCTTCCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAAAG
Flanking Amino Acid:
DRQAERAFQQVQVMEEKLKA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73
37.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
60
0.23
0.9
55.7
33.5
Minor 5ss
43.2
-0.7
2.9
58.4
46.1
Minor BPS
72
0.55
1.4
73.29
38.8

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667