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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28406572_28407969_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28406572 - 28407969
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAACTC
5'SS Class:
major
3'SS Sequence:
TATGTGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTAAATTTATGT
Flanking Amino Acid:
KEWVTVKLHELEVENQNLRL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
64.9
39.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.5
0.6
0.9
73.8
41.4
Minor 5ss
42
-0.9
3.2
59.4
45.3
Minor BPS
46.1
-0.2
2
66.39
44.1

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667