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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28408701_28410270_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28408701 - 28410270
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGAGT
5'SS Class:
major
3'SS Sequence:
ATTTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATTGTATTT
Flanking Amino Acid:
SDYTEGKNTLEKDILETTFA
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.4
44.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79
0.65
0.8
70.7
40.5
Minor 5ss
33
-1.9
3.4
49.4
46.4
Minor BPS
43.8
-0.3
2.1
63.02
42.5

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667