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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28412922_28413543_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28412922 - 28413543
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACTGCA
5'SS Class:
major
3'SS Sequence:
TTAATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTCTGTTAATT
Flanking Amino Acid:
TTPVYTTLKGKATQISNSPF
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.7
0.74
0.9
77.6
36.4
Minor 5ss
38.1
-1.3
3.1
41.8
44.8
Minor BPS
57.5
0.31
2
77.64
39

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667