Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28413689_28415925_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28413689 - 28415925

Intron Length:

2237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTAACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TCTCTTTTAACT

Flanking Amino Acid:

GPSSPRAMKRGVSLSSMTSE

Intron Amino Acid Position:

664

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

74.1

38.3

Major BPS

89.7

0.98

0.7

89.9

Major PPT

78.8

0.65

0.9

78.1

Minor 5ss

37.3

-1.4

3.1

47.6

48.1

Minor BPS

75.1

0.87

1.1

84.55

36.3

Associated Gene:

Gene:

PLEKHH2

Ensembl Gene ID:

ENSAPLG00000010128

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010589

28390406 - 28440072

49667