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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28417616_28418097_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28417616 - 28418097
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTGCT
5'SS Class:
major
3'SS Sequence:
TGCCACTTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATGTTCTTAAAG
Flanking Amino Acid:
ERGDGKQTIQLTTEKRTYYL
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
66
39.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.2
0.39
0.9
61.4
34.6
Minor 5ss
34.4
-1.8
3.4
50.5
46
Minor BPS
66.7
0.39
1.5
66.67
41

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667