About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28422412_28423317_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28422412 - 28423317
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
ATTTTTCTACTT
Flanking Amino Acid:
YLLIGSKHEKDTWLYHLTVA
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
76.8
33.4
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
83.9
0.76
0.7
82.9
27.2
Minor 5ss
31.6
-2.1
3.1
39.6
45.9
Minor BPS
50
0.08
1.9
73.99
37.6

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667