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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28423427_28425915_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28423427 - 28425915
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTATCTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTGAATTAATT
Flanking Amino Acid:
CKLLNMEGDTTSQVWRHPTL
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
81.2
36.4
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
49.7
0.06
1.9
68.34
42.6

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667