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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28426029_28427563_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28426029 - 28427563
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
LQTEAIKLFKTCQLFINAAV
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.4
0.73
0.8
74.9
39.5
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667