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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28429643_28430115_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28429643 - 28430115
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTTAT
U12 Branch Point Sequence:
ATTGCCTTATTT
Flanking Amino Acid:
KLHLKKNADSRTEFGKYAIY
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
61.4
44.7
Major BPS
61.1
0.28
1.3
53.6
43.8
Major PPT
87.5
0.84
0.8
83.5
31.6
Minor 5ss
42.1
-0.9
3
55.3
48.9
Minor BPS
66.5
0.6
1.7
82.08
39.9

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667