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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28430294_28431300_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28430294 - 28431300
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
GGTGATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
AAGTGCTTAATA
Flanking Amino Acid:
PVHFMNGIYQVVGFDASTTV
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
70.1
0.45
1
66.1
45
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
61.2
0.35
1.8
66.76
40

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667