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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28431457_28432859_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28431457 - 28432859
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACTTTCTTACTG
Flanking Amino Acid:
IEHCLQGNIKICDIISKWEQ
Intron Amino Acid Position:
1194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.9
0.56
0.9
66.1
44.9
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
57.8
0.11
1.7
60.57
42.2

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667