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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28432958_28433349_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28432958 - 28433349
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
GTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATA
Flanking Amino Acid:
TRTVRLTYKNRLYFSVQVHG
Intron Amino Acid Position:
1226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.7
0.74
0.8
77.1
31.6
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
69.2
0.6
1.4
75.77
36

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667