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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28434376_28435961_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28434376 - 28435961
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCAATAACT
Flanking Amino Acid:
YRHGCSEEQLRQLCQRLSTR
Intron Amino Acid Position:
1322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.2
0.61
0.9
73.4
35.7
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
65
0.55
1.9
86.43
39.1

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667