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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28436092_28436914_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28436092 - 28436914
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAGT
Flanking Amino Acid:
FFGAKLFAAKPLATSTLEKS
Intron Amino Acid Position:
1366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.1
0.72
0.7
77.6
30.7
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
51.7
0.13
1.7
68.65
42.6

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667