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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28438852_28439889_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28438852 - 28439889
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
GTTCCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAAG
Flanking Amino Acid:
KLLFAMTKPKILEITLLIAS
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.8
0.65
0.9
72
38
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
54.1
-0
1.7
61.73
40.1

Associated Gene:

Gene:
PLEKHH2
Ensembl Gene ID:
ENSAPLG00000010128
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010589
28390406 - 28440072
49667