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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28447261_28447821_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28447261 - 28447821
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTGGATA
Flanking Amino Acid:
KTTIILRCLEREEIPKPTLA
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70
0.45
1
68.6
37.3
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
60.2
0.32
1.4
72.35
33.1

Associated Gene:

Gene:
DYNC2LI1
Ensembl Gene ID:
ENSAPLG00000010005
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010442
28443991 - 28456820
12830