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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28447892_28448897_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28447892 - 28448897
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
AACTCTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTGTTTCTAACA
Flanking Amino Acid:
FGRRARSHNAPKDTAHFWEL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.3
0.66
0.9
73.2
36.2
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
58
0.25
1.7
68.12
38.4

Associated Gene:

Gene:
DYNC2LI1
Ensembl Gene ID:
ENSAPLG00000010005
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010442
28443991 - 28456820
12830