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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28448987_28450846_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28448987 - 28450846
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CCTTTTTTAATA
Flanking Amino Acid:
IQIPITSNNIRSFAVVLVLD
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
79.1
0.65
0.8
76.7
30.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
69
0.59
1.2
69.67
37.9

Associated Gene:

Gene:
DYNC2LI1
Ensembl Gene ID:
ENSAPLG00000010005
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010442
28443991 - 28456820
12830