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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28453267_28454264_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28453267 - 28454264
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
GTTCCAATATCA
Flanking Amino Acid:
IIGSKYDIFHEFDSEMRKTV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
70.2
0.5
1
72.1
33
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
46.5
-0.2
2.1
64.51
40.9

Associated Gene:

Gene:
DYNC2LI1
Ensembl Gene ID:
ENSAPLG00000010005
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010442
28443991 - 28456820
12830