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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28468382_28469530_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28468382 - 28469530
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
NEFYGLSFTCGGVNSSTINS
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
ABCG5
Ensembl Gene ID:
ENSAPLG00000009909
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048334
28468188 - 28482787
14600
ENSAPLT00000010341
28468188 - 28483354
15167