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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28471503_28474256_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28471503 - 28474256
Intron Length:
2754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
SVAIFSIFIYWTVGLYPDVF
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.7
0.92
0.8
87.5
30
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
ABCG5
Ensembl Gene ID:
ENSAPLG00000009909
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010341
28468188 - 28483354
15167
ENSAPLT00000048334
28468188 - 28482787
14600