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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28474396_28475068_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28474396 - 28475068
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
GTATTTAATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATC
Flanking Amino Acid:
YTGLLNAVALFPPLRAISDQ
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
73.1
32
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72
0.5
1
63.6
46.1
Minor 5ss
41.9
-0.9
3
58.5
40.5
Minor BPS
68.8
0.57
1.4
74.88
36.1

Associated Gene:

Gene:
ABCG5
Ensembl Gene ID:
ENSAPLG00000009909
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010341
28468188 - 28483354
15167
ENSAPLT00000048334
28468188 - 28482787
14600