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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28475740_28480770_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28475740 - 28480770
Intron Length:
5031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTAAATTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATGTTGTAAATT
Flanking Amino Acid:
SIAAQLLQDPMDLTSVDTRS
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74
0.54
1
65.7
44.2
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
47.7
-0.1
2.3
69.02
42.9

Associated Gene:

Gene:
ABCG5
Ensembl Gene ID:
ENSAPLG00000009909
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048334
28468188 - 28482787
14600