About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28483346_28484901_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28483346 - 28484901
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCACGACAT
5'SS Class:
weak_major
3'SS Sequence:
TCTCCAGACCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
ACTATTGTAACT
Flanking Amino Acid:
AAPLHGRGLCAQDSIFCSEE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.4
51.3
44.8
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
52
0.05
1.1
49.2
37.7
Minor 5ss
24.2
-3
4.2
39.3
46
Minor BPS
49.8
0.07
2
69.95
41.5

Associated Gene:

Gene:
ABCG8
Ensembl Gene ID:
ENSAPLG00000009721
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010131
28483082 - 28496858
13777