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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28490291_28492719_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28490291 - 28492719
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TAATGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTTATGTCAAAT
Flanking Amino Acid:
PRYSNPADFYVDLASIDKQT
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
77.7
37.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.8
0.6
0.9
70
40.8
Minor 5ss
37.1
-1.5
2.7
48.7
40
Minor BPS
44.4
-0.3
2.3
65.7
44.7

Associated Gene:

Gene:
ABCG8
Ensembl Gene ID:
ENSAPLG00000009721
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010131
28483082 - 28496858
13777