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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28494353_28495752_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28494353 - 28495752
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TATTGCTTAATA
Flanking Amino Acid:
YSVSPYFFAKILGELPEHCA
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
72.3
0.5
1
68.9
35.9
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
72.4
0.7
1.7
80.47
35.5

Associated Gene:

Gene:
ABCG8
Ensembl Gene ID:
ENSAPLG00000009721
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010131
28483082 - 28496858
13777