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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28526762_28531622_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28526762 - 28531622
Intron Length:
4861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACATGACA
Flanking Amino Acid:
RMLCKTNNVKEAYDFFLQTQ
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85.6
0.8
0.7
85.1
29.7
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
49.8
-0
1.9
66.78
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009368
28507401 - 28564582
57182