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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28534581_28534833_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28534581 - 28534833
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTTCTAAAG
Flanking Amino Acid:
FAKKCISNNQMETLEQLVEL
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.3
0.77
0.9
86.6
24.9
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
57
0.08
1.8
68.81
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009368
28507401 - 28564582
57182