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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28558919_28560336_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28558919 - 28560336
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTAATTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTCTTTTAATT
Flanking Amino Acid:
VEDAMNLKEKVFPRNSPVAL
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.8
0.63
0.8
70.5
39.9
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
72.8
0.79
1.1
83.14
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009368
28507401 - 28564582
57182