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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28560468_28561662_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28560468 - 28561662
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTAA
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTCCTCTAGT
Flanking Amino Acid:
QLIHALCEEENMQKALEVKA
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.9
34.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82.6
0.73
0.7
81
31
Minor 5ss
54.1
0.14
2.1
66.7
44.7
Minor BPS
58.3
0.34
2.2
84.68
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009368
28507401 - 28564582
57182