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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28563327_28564437_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28563327 - 28564437
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
RYCLTPPGPTEAVGYFLYHL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
65.5
40.8
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
40.8
-1
3.8
60.4
46.7
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009368
28507401 - 28564582
57182