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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28582419_28582838_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28582419 - 28582838
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
ATCAAGAGTGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTCTTTCGAATT
Flanking Amino Acid:
SSLVKGHARSGKYPFSDEDG
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
68.5
38.9
Major BPS
70.2
0.5
1
72.1
33
Major PPT
56.1
0.14
1.1
47.5
43.9
Minor 5ss
39.9
-1.1
3.3
47.2
48.3
Minor BPS
50.6
0.1
1.7
72.57
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038809
28582382 - 28597878
15497