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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28583710_28583787_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28583710 - 28583787
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AAATCATTAACT
Flanking Amino Acid:
MEEANVQPNRVTYQRLIAAY
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
75.5
40.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
41.5
-0.9
3.2
56
42.5
Minor BPS
71.3
0.75
1.5
82.53
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038809
28582382 - 28597878
15497