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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28584653_28588623_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28584653 - 28588623
Intron Length:
3971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGAAAGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTCATCTGAAAG
Flanking Amino Acid:
LKVFQEICREELAHTIWDKM
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
54.8
0.11
1.1
48.2
42.7
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
47.8
-0.3
1.7
50.93
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038809
28582382 - 28597878
15497