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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_285848_287365_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
285848 - 287365
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTCGC
5'SS Class:
major
3'SS Sequence:
CTTTATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAAAA
Flanking Amino Acid:
EQIKQDILKEIVKRTKKRKS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
61.8
42.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.8
77.7
34.9
Minor 5ss
43.1
-0.8
2.8
57.3
40.6
Minor BPS
68.9
0.59
1.6
81.74
32.6

Associated Gene:

Gene:
SLX4IP
Ensembl Gene ID:
ENSAPLG00000009267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009642
249812 - 288185
38374
ENSAPLT00000009639
213038 - 288185
75148
ENSAPLT00000036500
213038 - 289630
76593
ENSAPLT00000023216
240842 - 288185
47344