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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28588827_28597783_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28588827 - 28597783
Intron Length:
8957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAAGC
Flanking Amino Acid:
LPPRAPGPALRNVVYQPRFL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.2
0.61
1
74.9
38.8
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
66.3
0.49
1.8
79.02
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038809
28582382 - 28597878
15497