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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28650004_28652807_R

Intron Information:

Intron Rank:
147140
Intron Class:
major
Intron Phase:
Intron Coordinates:
28650004 - 28652807
Intron Length:
2804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTATTTTATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.9
81.5
34.9
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022583
28649458 - 28653527
4070