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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28686150_28693086_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28686150 - 28693086
Intron Length:
6937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
GAGTAGCTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
44
-0.3
2.4
64
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027602
28685799 - 28715513
29715