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Intron Name: Anas_platyrhynchos_platyrhynchos_3_28693232_28702852_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

28693232 - 28702852

Intron Length:

9621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

GGAATTATAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

87.2

Major BPS

77.9

0.69

78.3

31.3

Major PPT

0.77

0.8

75.9

Minor 5ss

36.1

-1.6

50.2

45.8

Minor BPS

49.1

0.01

1.6

64.03

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048047

28683501 - 28724987

41487

ENSAPLT00000027602

28685799 - 28715513

29715

ENSAPLT00000017580

28683501 - 28721551

38051